R data.frame for 10 hepatocellular carcinoma sequencing samples.

Source: R/data.R

R data.frame for 10 hepatocellular carcinoma sequencing samples from Nguyen, Bastien, et al., 2022.

data(vafDatasetExampleSingleSamples)

Format

R data.frame with 8 columns: 1) SAMPLE_ID; 2) GENE_ID; 3) REF_COUNT; 4) ALT_COUNT; 5) COPY_NUMBER; 6) NORMAL_PLOIDY; 7) VAF_ESTIMATE; 8) CCF_ESTIMATE.

Source

Nguyen, Bastien, et al. "Genomic characterization of metastatic patterns from prospective clinical sequencing of 25,000 patients." Cell 185.3 (2022): 563-575.

Value

R data.frame with 8 columns: 1) SAMPLE_ID; 2) GENE_ID; 3) REF_COUNT; 4) ALT_COUNT; 5) COPY_NUMBER; 6) NORMAL_PLOIDY; 7) VAF_ESTIMATE; 8) CCF_ESTIMATE.