Reference

All functions
agony()	agony '
agonyArcs	Example dataset to test the agony function.
amlExample	Example dataset for 366 patients with Acute Myeloid Leukaemia.
asceticCCF()	asceticCCF
asceticCCFAssessment()	asceticCCFAssessment
asceticCCFResampling()	asceticCCFResampling
asceticPhylogenies()	asceticPhylogenies
asceticPhylogeniesAssessment()	asceticPhylogeniesAssessment
asceticPhylogeniesBootstrap()	asceticPhylogeniesBootstrap
ccfDatasetExampleSingleSamples	Cancer cell fractions matrix for 10 hepatocellular carcinoma sequencing samples.
dataExamples	List data structure to run examples
datasetExamplePhylogenies	Binary matrix for 10 myeloid malignancies samples sequenced with Tapestri.
datasetExampleSingleSamples	Binary matrix for 10 hepatocellular carcinoma sequencing samples.
evoSigs()	evoSigs
modelsPhylogenies	Phylogenetic models estimated for each sample included in dataset.
resExamplePhylogeniesDatasetBootstrap	Example of results obtained by running the function perform.ascetic.phylogenies.dataset.bootstrap on datasetExamplePhylogenies.
resExampleSingleSamplesResampling	Example of results obtained by running the function perform.ascetic.ccf.dataset.resampling on datasetExampleSingleSamples.
vafDatasetExampleSingleSamples	R data.frame for 10 hepatocellular carcinoma sequencing samples.