getCNCounts

Create Copy Numbers (CNs) counts matrix from input data. This function has been derived from: https://github.com/UCL-Research-Department-of-Pathology/panConusig/blob/main/R/setup_CNsigs.R

getCNCounts(data)

Arguments

data

A data.frame with copy number data having 6 columns: sample name, chromosome, start position, end position, major CN, minor CN.

Value

A matrix with Copy Numbers (CNs) counts per patient.

Examples

data(cn_example_reduced)
res <- getCNCounts(data = cn_example_reduced)