All functions

background

Germline replication error

background2

COSMIC replication error

cn_example_reduced

A reduced version of the copy number data for 5 TCGA samples in the format compatible with the import function

getCNCounts()

getCNCounts

getIDCounts()

getIDCounts

getMNVCounts()

getMNVCounts

getSBSCounts()

getSBSCounts

groupsCNPlot()

groupsCNPlot

groupsCXPlot()

groupsCXPlot

groupsIDPlot()

groupsIDPlot

groupsMNVPlot()

groupsMNVPlot

groupsSBSPlot()

groupsSBSPlot

id_example_reduced

A reduced version of the indel data for 3 samples in the format compatible with the import function

patients

Point mutations for 560 breast tumors

patientsCNPlot()

patientsCNPlot

patientsCXPlot()

patientsCXPlot

patientsIDPlot()

patientsIDPlot

patientsMNVPlot()

patientsMNVPlot

patientsSBSPlot()

patientsSBSPlot

plot_data_examples

List data structure to run examples

signaturesAssignment()

signaturesAssignment

signaturesCNPlot()

signaturesCNPlot

signaturesCV()

signaturesCV

signaturesCXPlot()

signaturesCXPlot

signaturesDecomposition()

signaturesDecomposition

signaturesIDPlot()

signaturesIDPlot

signaturesMNVPlot()

signaturesMNVPlot

signaturesSBSPlot()

signaturesSBSPlot

signaturesSignificance()

signaturesSignificance

ssm560_reduced

A reduced version of the point mutations for 560 breast tumors in the format compatible with the import function