patientsSBSPlot — patientsSBSPlot • RESOLVE

Plot Single Base Substitutions (SBS) counts for a set of given patients.

patientsSBSPlot(
  trinucleotides_counts,
  samples = rownames(trinucleotides_counts),
  freq = FALSE,
  xlabels = FALSE
)

Arguments

trinucleotides_counts: Trinucleotides counts matrix.
samples: Name of the samples. This should match a rownames in trinucleotides_counts.
freq: Boolean value; shall I display rates instead of counts?
xlabels: Boolean value; shall I display x labels?

Value

A ggplot2 object.

Examples

data(plot_data_examples)
counts <- plot_data_examples[['patients.SBS.plot']][['counts']]
patientsSBSPlot(trinucleotides_counts=counts,samples=rownames(counts)[seq_len(2)])